PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 43951.m000016
Common NameRCOM_2020090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 195aa    MW: 21593.2 Da    PI: 9.3615
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
43951.m000016genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-3089148159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+
  43951.m000016  89 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSIEDQTILVATYEGEHNHP 148
                    58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-2980150IPR003657WRKY domain
PROSITE profilePS5081126.69384150IPR003657WRKY domain
SuperFamilySSF1182901.28E-2586150IPR003657WRKY domain
SMARTSM007745.1E-3389149IPR003657WRKY domain
PfamPF031062.3E-2490148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MLTVMCENYN ALKSQLMDYV SKNRDKELSP SRKRKSESSN NDNTIAMNGN SESSSTDEES  60
CKKPREEIVK AKISRTYVKT EAPDTSLIVK DGYQWRKYGQ KVTRDNPSPR AYFKCSFAPS  120
CPVKKKVQRS IEDQTILVAT YEGEHNHPHP SQMEATSGAS RSLTLGSVPC SASLGSSGPT  180
ITLDLTKSKS SNDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21881501374WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13035SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002539501.21e-144PREDICTED: probable WRKY transcription factor 40, partial
SwissprotQ9SAH72e-76WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLB9TMN21e-144B9TMN2_RICCO; WRKY transcription factor, putative (Fragment)
STRINGPOPTR_0001s03620.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-77WRKY DNA-binding protein 40